Function reference • cancerscreening

KHIS Metadata

Download metadata information related to the organisation units, categories and data elements

get_organisation_units_metadata(): Get Organisation Units Metadata

get_data_elements_metadata(): Get Data Elements Metadata

KHIS Formatted Data

Download formatted data using the analytics endpoint

get_analytics_formatted(): Retrieves Analytics Table Data from KHIS

get_data_sets_formatted(): Retrieves Data Set Reporting Rate Metrics

Cervical cancer screening

Downloading data related to cervical cancer screening

get_cervical_screened(): Retrieves Cervical Cancer Screening Data

get_cervical_hiv_screened(): Retrieves Cervical Cancer Screening Data on HIV Positive Women

get_cervical_positive(): Retrieves Cervical Cancer Screening Data with Positive Results

get_cervical_treated(): Retrieves Cervical Cancer Precancerous Treatment Data

Breast cancer screening

Downloads data related to breast cancer screening

get_breast_cbe(): Retrieves Data for Clinical Breast Examinations (CBE) Conducted

get_breast_mammogram(): Retrieves Data for Mammograms Conducted

get_breast_ultrasound(): Retrieves Data for Breast Ultrasound Conducted

Colorectal cancer screening

Downloads data related to colorectal cancer screening

get_colorectal_fobt(): Retrieves Data for Colorectal Screening Using FOBT

get_colorectal_colonoscopy(): Retrieves Data for Colorectal Screening using Colonoscopy

Download laboratory diagnostic data

Download laboratory diagnostics data

get_lab_fluid_cytology(): Retrieves the Fluid Cytology Data

get_lab_tissue_histology(): Retrieves the Tissue Histology Laboratory Data

get_lab_bone_marrow(): Retrieves the Bone Marrow Laboratory Data

get_lab_fna(): Retrieves the Fine-Needle Aspiration Laboratory Data

get_lab_smears(): Retrieves the Cytology Smears Laboratory Data

Authorization Credentials

Take and securely store the KHIS authorization credentials

reexports khis_cred khis_has_cred khis_cred_clear khis_username khis_base_url %>%: Objects exported from other packages

with_cancerscreening_quiet() local_cancerscreening_quiet(): cancerscreening configuration

Target population

Fetches the target population for the different screening programs

get_cervical_target_population() get_breast_cbe_target_population() get_breast_mammogram_target_population() get_colorectal_target_population(): Screening Target Populations

get_filtered_population(): Filters the Population